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Source-faithful physiology lab for Niederer, Hunter, Smith, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_q_1",
"label": "Initial Model State Q 1 (source Q_1)",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.initial_model_state_q_1",
"description": "Initial value for Model State Q 1 (source Q_1). Maps to source symbol `Q_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_model_state_q_2",
"label": "Initial Model State Q 2 (source Q_2)",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.initial_model_state_q_2",
"description": "Initial value for Model State Q 2 (source Q_2). Maps to source symbol `Q_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.variable_labels"
},
{
"name": "alpha_0",
"label": "Alpha 0",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_0",
"description": "Alpha 0. Maps to source symbol `alpha_0`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_1",
"label": "Alpha 1",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_1",
"description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_2",
"label": "Alpha 2",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_2",
"description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_3",
"label": "Alpha 3",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_3",
"description": "Alpha 3. Maps to source symbol `alpha_3`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_r1",
"label": "Alpha R1",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_r1",
"description": "Alpha R1. Maps to source symbol `alpha_r1`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_r2",
"label": "Alpha R2",
"maps_to": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.alpha_r2",
"description": "Alpha R2. Maps to source symbol `alpha_r2`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Niederer2006 - Hunter Smith Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model",
"parameters": {
"model_path": "data/niederer_hunter_smith_2006.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_state"
],
"from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.state"
},
{
"to": [
"visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_summary"
],
"from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_trajectory"
],
"from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model_variable_labels"
],
"from": "physiology_cellml_niederer_hunter_smith_2006_niedererhuntersmith2006_model.variable_labels"
}
],
"package": "niederer2006-hunter-smith",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Niederer, Hunter, Smith, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageniederer2006-hunter-smith
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother