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Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_index_induced_ligand_deg_level",
"label": "Index Induced Ligand Deg",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.initial_index_induced_ligand_deg_level",
"description": "Index Induced Ligand Deg source parameter. Maps to SBML symbol `index_induced_ligand_deg` and preserves the bundled default."
},
{
"name": "initial_kin_deg_ligand_level",
"label": "Kin Deg Ligand",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.initial_kin_deg_ligand_level",
"description": "Kin Deg Ligand source parameter. Maps to SBML symbol `kin_deg_Ligand` and preserves the bundled default."
},
{
"name": "initial_kout_deg_ligand_100p_m_level",
"label": "Kout Deg Ligand 100p M",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.initial_kout_deg_ligand_100p_m_level",
"description": "Kout Deg Ligand 100p M source parameter. Maps to SBML symbol `kout_deg_Ligand_100pM` and preserves the bundled default."
}
],
"outputs": [
{
"name": "active_tgfr2",
"label": "active TGFR2",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.active_tgfr2",
"description": "active TGFR2. Maps to SBML symbol `Active_R2` and is emitted in native SBML units."
},
{
"name": "active_tgf_beta_tgfr1_tgfr2",
"label": "active TGF-beta TGFR1 TGFR2",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.active_tgf_beta_tgfr1_tgfr2",
"description": "active TGF-beta TGFR1 TGFR2. Maps to SBML symbol `Active_Rec` and is emitted in native SBML units."
},
{
"name": "active_tgf_beta_tgfr1_tgfr2_endo",
"label": "active TGF-beta TGFR1 TGFR2 Endo",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.active_tgf_beta_tgfr1_tgfr2_endo",
"description": "active TGF-beta TGFR1 TGFR2 Endo. Maps to SBML symbol `Active_Rec_endo` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"tgf-beta",
"smad"
],
"title": "Strasen2018 - TGFb SMAD Signalling Class 1 Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model_state"
],
"from": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.state"
},
{
"to": [
"visualisation.signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model_summary"
],
"from": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model_species_labels"
],
"from": "signaling_sbml_strasen2018_tgfb_smad_signalling_class_1_biomd0000000998_model.species_labels"
}
],
"package": "strasen2018-tgfb-smad-signalling-class-1",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagestrasen2018-tgfb-smad-signalling-class-1
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebitgf-betasmadvisualisationother