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This model is from the article: Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei. Albert MA, Haanstra JR, Hannaert V, Van Roy J, Opperdoes FR, Bakk.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_external",
"label": "Initial Glucose External",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glucose_external",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_25`."
},
{
"name": "initial_pyruvate_external",
"label": "Initial Pyruvate External",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_pyruvate_external",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_26`."
},
{
"name": "initial_glycerol_external",
"label": "Initial Glycerol External",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glycerol_external",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_27`."
},
{
"name": "initial_glycerol3phosphate",
"label": "Initial Glycerol3phosphate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_glycerol3phosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_22`."
},
{
"name": "initial_pyruvate",
"label": "Initial Pyruvate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_pyruvate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
},
{
"name": "initial_fructose16bisphosphate",
"label": "Initial Fructose16bisphosphate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.initial_fructose16bisphosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_16`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.species_labels"
},
{
"name": "glucose_external",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glucose_external"
},
{
"name": "pyruvate_external",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.pyruvate_external"
},
{
"name": "glycerol_external",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glycerol_external"
},
{
"name": "glycerol3phosphate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.glycerol3phosphate"
},
{
"name": "pyruvate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.pyruvate"
},
{
"name": "fructose16bisphosphate",
"maps_to": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.fructose16bisphosphate"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Albert2005 Glycolysis Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_state"
],
"from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_summary"
],
"from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model_species_labels"
],
"from": "systemsbiology_sbml_albert2005_glycolysis_biomd0000000211_model.species_labels"
}
],
"package": "albert2005-glycolysis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is from the article: Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei. Albert MA, Haanstra JR, Hannaert V, Van Roy J, Opperdoes FR, Bakk.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagealbert2005-glycolysis
Created2026-05-17
Updated2026-06-13
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother