Vilar2002 - Mathematical Genetic Oscillator Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_dap",
        "label": "Initial Dap",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.initial_dap",
        "description": "Initial value for Dap. Maps to source symbol `DAp`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molecules"
        ]
      },
      {
        "name": "initial_drp",
        "label": "Initial Drp",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.initial_drp",
        "description": "Initial value for Drp. Maps to source symbol `DRP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "molecules"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.variable_labels"
      },
      {
        "name": "dap",
        "label": "Dap",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.dap",
        "description": "Dap. Maps to source symbol `DAp`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "drp",
        "label": "Drp",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.drp",
        "description": "Drp. Maps to source symbol `DRP`. Units: molecules. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_da",
        "label": "Model State Da (source DA)",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.model_state_da",
        "description": "Model State Da (source DA). Maps to source symbol `DA`. Units: molecules. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_dr",
        "label": "Model State Dr (source DR)",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.model_state_dr",
        "description": "Model State Dr (source DR). Maps to source symbol `DR`. Units: molecules. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_ma",
        "label": "Model State Ma (source MA)",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.model_state_ma",
        "description": "Model State Ma (source MA). Maps to source symbol `MA`. Units: molecules. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_mr",
        "label": "Model State Mr (source MR)",
        "maps_to": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.model_state_mr",
        "description": "Model State Mr (source MR). Maps to source symbol `MR`. Units: molecules. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Vilar2002 - Mathematical Genetic Oscillator Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model",
      "parameters": {
        "model_path": "data/vilar_kueh_barkai_leibler_2002.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model_state"
      ],
      "from": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model_summary"
      ],
      "from": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model_trajectory"
      ],
      "from": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model_variable_labels"
      ],
      "from": "physiology_cellml_vilar_kueh_barkai_leibler_2002_vilarkuehbarkaileibler2002_model.variable_labels"
    }
  ],
  "package": "vilar2002-mathematical-genetic-oscillator",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Vilar, Kueh, Barkai, Leibler, 2002. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}