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Source-faithful physiology lab for Simon-Chica et al. (2021) Novel insights into the electrophysiology of murine cardiac macrophages. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_v",
"label": "Initial Model State V (source V)",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.initial_model_state_v",
"description": "Initial value for Model State V (source V). Maps to source symbol `V`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label.",
"accepted_units": [
"mV"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.variable_labels"
},
{
"name": "membrane_capacitance",
"label": "Membrane Capacitance",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.membrane_capacitance",
"description": "Membrane Capacitance. Maps to source symbol `Cm`. Units: uF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_v",
"label": "Model State V (source V)",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_state_v",
"description": "Model State V (source V). Maps to source symbol `V`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "gkir",
"label": "Gkir",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.gkir",
"description": "Gkir. Maps to source symbol `GKir`. Units: mS. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ib_eb",
"label": "Ib Eb",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.ib_eb",
"description": "Ib Eb. Maps to source symbol `Eb`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameter_k_e",
"label": "Model Parameter K E (source K_e)",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_parameter_k_e",
"description": "Model Parameter K E (source K_e). Maps to source symbol `K_e`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_variable_ib",
"label": "Model Variable Ib (source Ib)",
"maps_to": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.model_variable_ib",
"description": "Model Variable Ib (source Ib). Maps to source symbol `Ib`. Units: A_per_F. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Simon2021 - Novel Insights E Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model",
"parameters": {
"model_path": "data/type0.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_state"
],
"from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.state"
},
{
"to": [
"visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_summary"
],
"from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_trajectory"
],
"from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model_variable_labels"
],
"from": "physiology_cellml_simon_chica_et_al_2021_novel_insights_into_the_e_638_model.variable_labels"
}
],
"package": "simon2021-novel-insights-e",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Simon-Chica et al. (2021) Novel insights into the electrophysiology of murine cardiac macrophages. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagesimon2021-novel-insights-e
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother