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Clean Biosimulant lab for systems signaling model: Goldbeter2007_Somitogenesis_Switch. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_ra_state",
"label": "Initial source-defined RA state",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.initial_source_defined_ra_state",
"description": "Initial level of source-defined RA state. Maps to SBML symbol `RA`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "cyp26_m_rna",
"label": "Cyp26 M RNA",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.cyp26_m_rna",
"description": "Cyp26 M RNA. Maps to SBML symbol `M_C` and is emitted in native SBML units."
},
{
"name": "cyp26",
"label": "CYP26",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.cyp26",
"description": "CYP26. Maps to SBML symbol `C` and is emitted in native SBML units."
},
{
"name": "source_defined_fgf_state",
"label": "source-defined FGF state",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.source_defined_fgf_state",
"description": "source-defined FGF state. Maps to SBML symbol `F` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Goldbeter2007_Somitogenesis_Switch Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_state"
],
"from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.state"
},
{
"to": [
"visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_summary"
],
"from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model_species_labels"
],
"from": "signaling_sbml_goldbeter2007_somitogenesis_switch_biomd0000000275_model.species_labels"
}
],
"package": "goldbeter2007-somitogenesis-switch",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Goldbeter2007_Somitogenesis_Switch. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegoldbeter2007-somitogenesis-switch
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother