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This a model from the article: Modeling the effects of treating diabetic wounds with engineered skinsubstitutes. It can be used to explore systemsbiology waugh2006 woundhealing diabetic modela model1006230106 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_phi_r",
"label": "Initial Phi R",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_phi_r",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phi_R`."
},
{
"name": "initial_phi_i",
"label": "Initial Phi I",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_phi_i",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `phi_I`."
},
{
"name": "initial_model_state_t",
"label": "Initial Model State T",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_t",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `T`."
},
{
"name": "initial_model_state_p",
"label": "Initial Model State P",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P`."
},
{
"name": "initial_model_state_h",
"label": "Initial Model State H",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_h",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `H`."
},
{
"name": "initial_model_state_f",
"label": "Initial Model State F",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.initial_model_state_f",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `F`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.species_labels"
},
{
"name": "phi_r",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.phi_r"
},
{
"name": "phi_i",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.phi_i"
},
{
"name": "model_state_t",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_t"
},
{
"name": "model_state_p",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_p"
},
{
"name": "model_state_h",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_h"
},
{
"name": "model_state_f",
"maps_to": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.model_state_f"
}
]
},
"tags": [
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Waugh2006 Woundhealing Diabetic Modela Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_state"
],
"from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_summary"
],
"from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model_species_labels"
],
"from": "systemsbiology_sbml_waugh2006_woundhealing_diabetic_modela_model1006230106_model.species_labels"
}
],
"package": "waugh2006-woundhealing-diabetic-modela",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Modeling the effects of treating diabetic wounds with engineered skinsubstitutes. It can be used to explore systemsbiology waugh2006 woundhealing diabetic modela model1006230106 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagewaugh2006-woundhealing-diabetic-modela
Created2026-05-17
Updated2026-06-13
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother