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This model is from the article: The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. It can be used to explore systemsbiology pokhilko2012 circclock repressilatorfeedbackloo BioModels0000000412 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "light_amplitude",
"label": "Light Amplitude",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.light_amplitude",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightAmplitude`."
},
{
"name": "light_offset",
"label": "Light Offset",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.light_offset",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightOffset`."
},
{
"name": "twilight_period",
"label": "Twilight Period",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.twilight_period",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `twilightPeriod`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.species_labels"
},
{
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},
{
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{
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},
{
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"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.c_lux"
},
{
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},
{
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"maps_to": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.c_p7_m"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Pokhilko2012 Circclock Repressilatorfeedbackloop Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
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{
"to": [
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{
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"from": "systemsbiology_sbml_pokhilko2012_circclock_repressilatorfeedbackloop_biomd0000000412_model.species_labels"
}
],
"package": "pokhilko2012-circclock-repressilatorfeedbackloop",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is from the article: The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops Pokhilko A, Fernández AP, Edwards KD, Southern MM, Halliday KJ, Millar AJ. It can be used to explore systemsbiology pokhilko2012 circclock repressilatorfeedbackloo BioModels0000000412 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepokhilko2012-circclock-repressilatorfeedbackloop
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother