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Clean Biosimulant lab for systems signaling model: Neves2008 - Role of cell shape and size in controlling intracellular signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_amp_cyto",
"label": "Initial C AMP Cyto",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.initial_c_amp_cyto",
"description": "Initial level of C AMP Cyto. Maps to SBML symbol `cAMP_cyto`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ac_active_cyto_mem",
"label": "AC active Cyto Mem",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.ac_active_cyto_mem",
"description": "AC active Cyto Mem. Maps to SBML symbol `AC_active_cyto_mem` and is emitted in native SBML units."
},
{
"name": "mapk_active_cyto",
"label": "MAPK active Cyto",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.mapk_active_cyto",
"description": "MAPK active Cyto. Maps to SBML symbol `MAPK_active_cyto` and is emitted in native SBML units."
},
{
"name": "mek_active_cyto",
"label": "MEK active Cyto",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.mek_active_cyto",
"description": "MEK active Cyto. Maps to SBML symbol `MEK_active_cyto` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "Neves2008 - Role of cell shape and size in controlling intracellular signalling Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_state"
],
"from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.state"
},
{
"to": [
"visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_summary"
],
"from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model_species_labels"
],
"from": "signaling_sbml_neves2008_role_of_cell_shape_and_size_in_control_biomd0000000182_model.species_labels"
}
],
"package": "neves2008-role-of-cell-shape-and-size-in-control",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Neves2008 - Role of cell shape and size in controlling intracellular signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageneves2008-role-of-cell-shape-and-size-in-control
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisationother