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Source-faithful physiology lab for Yang, Tong, Mccarver, Hines, Beard, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_concentration",
"label": "Initial Calcium Concentration",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.initial_calcium_concentration",
"description": "Initial value for Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"micromolar"
]
},
{
"name": "initial_c_concentration",
"label": "Initial C Concentration",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.initial_c_concentration",
"description": "Initial value for C Concentration. Maps to source symbol `C`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"micromolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.variable_labels"
},
{
"name": "calcium_concentration",
"label": "Calcium Concentration",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.calcium_concentration",
"description": "Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_concentration",
"label": "C Concentration",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.c_concentration",
"description": "C Concentration. Maps to source symbol `C`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "age",
"label": "Age",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.age",
"description": "Age. Maps to source symbol `age`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_va",
"label": "Ca Va",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.ca_va",
"description": "Ca Va. Maps to source symbol `Va`. Units: ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_vv",
"label": "Ca Vv",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.ca_vv",
"description": "Ca Vv. Maps to source symbol `Vv`. Units: ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "concentration_cv",
"label": "Concentration Cv (source Cv)",
"maps_to": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.concentration_cv",
"description": "Concentration Cv (source Cv). Maps to source symbol `Cv`. Units: micromolar. Naming evidence: amount concentration units identify a concentration state."
}
]
},
"title": "Yang2006 - Population Based Analysis Methadone Distribution Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model",
"parameters": {
"model_path": "data/yang_tong_mccarver_hines_beard_2006.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_state"
],
"from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.state"
},
{
"to": [
"visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_summary"
],
"from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_trajectory"
],
"from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model_variable_labels"
],
"from": "physiology_cellml_yang_tong_mccarver_hines_beard_2006_yangtongmccarverhinesbeard2006_model.variable_labels"
}
],
"package": "yang2006-population-based-analysis-methadone-distribution",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Yang, Tong, Mccarver, Hines, Beard, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageyang2006-population-based-analysis-methadone-distribution
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother