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Minimal Model for Circadian Oscillations Citation Vilar JMG, Kueh HY, Barkai N, Leibler S, (2002) . It can be used to explore systemsbiology vilar2002 oscillator BioModels0000000035 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_dr",
"label": "Initial Model State Dr",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_model_state_dr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DR`."
},
{
"name": "initial_model_state_da",
"label": "Initial Model State Da",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_model_state_da",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DA`."
},
{
"name": "initial_model_state_mr",
"label": "Initial Model State Mr",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_model_state_mr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MR`."
},
{
"name": "initial_model_state_ma",
"label": "Initial Model State Ma",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_model_state_ma",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MA`."
},
{
"name": "initial_empty_set",
"label": "Initial Empty Set",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_empty_set",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `EmptySet`."
},
{
"name": "initial_d_rp",
"label": "Initial D Rp",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.initial_d_rp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DRp`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.species_labels"
},
{
"name": "model_state_dr",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.model_state_dr"
},
{
"name": "model_state_da",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.model_state_da"
},
{
"name": "model_state_mr",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.model_state_mr"
},
{
"name": "model_state_ma",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.model_state_ma"
},
{
"name": "empty_set",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.empty_set"
},
{
"name": "d_rp",
"maps_to": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.d_rp"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Vilar2002 Oscillator Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model_state"
],
"from": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model_summary"
],
"from": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model_species_labels"
],
"from": "systemsbiology_sbml_vilar2002_oscillator_biomd0000000035_model.species_labels"
}
],
"package": "vilar2002-oscillator",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Minimal Model for Circadian Oscillations Citation Vilar JMG, Kueh HY, Barkai N, Leibler S, (2002) . It can be used to explore systemsbiology vilar2002 oscillator BioModels0000000035 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagevilar2002-oscillator
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother