About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Clean Biosimulant lab for systems signaling model: Zymomonas ED Pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_co2ex",
"label": "Initial Co2ex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.initial_co2ex",
"description": "Initial level of Co2ex. Maps to SBML symbol `CO2ex`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glucex",
"label": "Initial Glucex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.initial_glucex",
"description": "Initial level of Glucex. Maps to SBML symbol `GLUCex`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ethanolex",
"label": "Ethanolex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.ethanolex",
"description": "Ethanolex. Maps to SBML symbol `ETHANOLex` and is emitted in native SBML units."
},
{
"name": "glucex",
"label": "Glucex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.glucex",
"description": "Glucex. Maps to SBML symbol `GLUCex` and is emitted in native SBML units."
},
{
"name": "pyrex",
"label": "Pyrex",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.pyrex",
"description": "Pyrex. Maps to SBML symbol `PYRex` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Zymomonas ED Pathway Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_state"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_summary"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_zymomonas_ed_pathway_model2008060001_model_species_labels"
],
"from": "signaling_sbml_zymomonas_ed_pathway_model2008060001_model.species_labels"
}
],
"package": "zymomonas-ed-pathway",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Zymomonas ED Pathway. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagezymomonas-ed-pathway
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother