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Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_sink_species",
"label": "Initial sink species",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.initial_sink_species",
"description": "Initial level of sink species. Maps to SBML symbol `Sink`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source",
"label": "Initial Source",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.initial_source",
"description": "Initial level of Source. Maps to SBML symbol `Source`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_tgf_beta_a",
"label": "Initial TGF-beta A",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.initial_tgf_beta_a",
"description": "Initial level of TGF-beta A. Maps to SBML symbol `Tgfb_A`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "stat3_nuc",
"label": "STAT3 Nuc",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.stat3_nuc",
"description": "STAT3 Nuc. Maps to SBML symbol `Stat3_nuc` and is emitted in native SBML units."
},
{
"name": "stat3_cyt",
"label": "STAT3 Cyt",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.stat3_cyt",
"description": "STAT3 Cyt. Maps to SBML symbol `Stat3_cyt` and is emitted in native SBML units."
},
{
"name": "smad7",
"label": "SMAD7",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.smad7",
"description": "SMAD7. Maps to SBML symbol `Smad7` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"tgf-beta",
"immune-signaling"
],
"title": "Hodgson2018 - TGFbeta signalling and inflammatory response Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model_state"
],
"from": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model_summary"
],
"from": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model_species_labels"
],
"from": "signaling_sbml_hodgson2018_tgfbeta_signalling_and_inflammatory_model1805080001_model.species_labels"
}
],
"package": "hodgson2018-tgfbeta-signalling-and-inflammatory",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for developmental and growth-control signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehodgson2018-tgfbeta-signalling-and-inflammatory
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebitgf-betaimmune-signalingvisualisationother