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Source-faithful physiology lab for Bertram, Satin, Zhang, Smolen, Sherman, 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_membrane_n",
"label": "Initial Membrane N",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.initial_membrane_n",
"description": "Initial value for Membrane N. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.variable_labels"
},
{
"name": "calcium_current",
"label": "Calcium Current",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_current",
"description": "Calcium Current. Maps to source symbol `IKCa`. Units: femtoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_current_ica",
"label": "Calcium Current Ica",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_current_ica",
"description": "Calcium Current Ica. Maps to source symbol `ICa`. Units: femtoA. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_conductance",
"label": "Calcium Conductance",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_conductance",
"description": "Calcium Conductance. Maps to source symbol `gKCa`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_conductance_g_ca",
"label": "Calcium Conductance G Ca",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.calcium_conductance_g_ca",
"description": "Calcium Conductance G Ca. Maps to source symbol `gCa`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_conductance",
"label": "Potassium Conductance",
"maps_to": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.potassium_conductance",
"description": "Potassium Conductance. Maps to source symbol `gK`. Units: picoS. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Bertram2004 - Calcium Glycolysis Mediate Multiple Bursting Modes Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model",
"parameters": {
"model_path": "data/bertram_satin_zhang_smolen_sherman_2004_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_state"
],
"from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_summary"
],
"from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_trajectory"
],
"from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model_variable_labels"
],
"from": "physiology_cellml_bertram_satin_zhang_smolen_sherman_2004_bertramsatinzhangsmolensherman2004_model.variable_labels"
}
],
"package": "bertram2004-calcium-glycolysis-mediate-multiple-bursting-modes",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Bertram, Satin, Zhang, Smolen, Sherman, 2004. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebertram2004-calcium-glycolysis-mediate-multiple-bursting-modes
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother