About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
This a model from the article: Mathematical model predicts a critical role for osteoclast autocrine regulation in the control of bone remodeling. Komarova SV, Smith RJ, Dixon SJ, Sims SM, Wahl LM Bone.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_steady_state_osteoclast",
"label": "Initial Steady State Osteoclast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_steady_state_osteoclast",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1_bar`."
},
{
"name": "initial_steady_state_osteoblast",
"label": "Initial Steady State Osteoblast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_steady_state_osteoblast",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2_bar`."
},
{
"name": "initial_osteoblast",
"label": "Initial Osteoblast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_osteoblast",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x2`."
},
{
"name": "initial_osteoclast",
"label": "Initial Osteoclast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_osteoclast",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1`."
},
{
"name": "initial_cells_actively_resorbing_bone",
"label": "Initial Cells Actively Resorbing Bone",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_cells_actively_resorbing_bone",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y1`."
},
{
"name": "initial_cells_actively_forming_bone",
"label": "Initial Cells Actively Forming Bone",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.initial_cells_actively_forming_bone",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `y2`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.species_labels"
},
{
"name": "steady_state_osteoclast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.steady_state_osteoclast"
},
{
"name": "steady_state_osteoblast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.steady_state_osteoblast"
},
{
"name": "osteoblast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.osteoblast"
},
{
"name": "osteoclast",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.osteoclast"
},
{
"name": "cells_actively_resorbing_bone",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.cells_actively_resorbing_bone"
},
{
"name": "cells_actively_forming_bone",
"maps_to": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.cells_actively_forming_bone"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Komarova2003 Boneremodeling Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_state"
],
"from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_summary"
],
"from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model_species_labels"
],
"from": "systemsbiology_sbml_komarova2003_boneremodeling_biomd0000000148_model.species_labels"
}
],
"package": "komarova2003-boneremodeling",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Mathematical model predicts a critical role for osteoclast autocrine regulation in the control of bone remodeling. Komarova SV, Smith RJ, Dixon SJ, Sims SM, Wahl LM Bone.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekomarova2003-boneremodeling
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother