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Source-faithful physiology lab for Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_reduced_gluthathione",
"label": "Initial Reduced Gluthathione",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.initial_reduced_gluthathione",
"description": "Initial value for Reduced Gluthathione. Maps to source symbol `GSH`. Units: millimolar. Naming evidence: source metadata names `GSH` as `reduced gluthathione`.",
"accepted_units": [
"millimolar"
]
},
{
"name": "initial_s_d_lactoylglutathione",
"label": "Initial S D Lactoylglutathione",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.initial_s_d_lactoylglutathione",
"description": "Initial value for S D Lactoylglutathione. Maps to source symbol `SDLGSH`. Units: millimolar. Naming evidence: source metadata names `SDLGSH` as `S-D-lactoylglutathione`.",
"accepted_units": [
"millimolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.variable_labels"
},
{
"name": "reduced_gluthathione",
"label": "Reduced Gluthathione",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.reduced_gluthathione",
"description": "Reduced Gluthathione. Maps to source symbol `GSH`. Units: millimolar. Naming evidence: source metadata names `GSH` as `reduced gluthathione`."
},
{
"name": "s_d_lactoylglutathione",
"label": "S D Lactoylglutathione",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.s_d_lactoylglutathione",
"description": "S D Lactoylglutathione. Maps to source symbol `SDLGSH`. Units: millimolar. Naming evidence: source metadata names `SDLGSH` as `S-D-lactoylglutathione`."
},
{
"name": "hemithioacetal",
"label": "Hemithioacetal",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.hemithioacetal",
"description": "Hemithioacetal. Maps to source symbol `HTA`. Units: millimolar. Naming evidence: source metadata names `HTA` as `hemithioacetal`."
},
{
"name": "keq",
"label": "Keq",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.keq",
"description": "Keq. Maps to source symbol `Keq`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "kmp",
"label": "Kmp",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.kmp",
"description": "Kmp. Maps to source symbol `Kmp`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "kmq",
"label": "Kmq",
"maps_to": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.kmq",
"description": "Kmq. Maps to source symbol `Kmq`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Margaridamartins2001 - Situ Kinetic Analysis Glyoxalase I Glyoxalase Ii Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model",
"parameters": {
"model_path": "data/martins_mendes_coreiro_freire_2001.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_state"
],
"from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.state"
},
{
"to": [
"visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_summary"
],
"from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_trajectory"
],
"from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model_variable_labels"
],
"from": "physiology_cellml_margaridamartins_mendes_coreiro_pocesfreire_2001_margaridamartinsmendescoreiropocesfreire2001_model.variable_labels"
}
],
"package": "margaridamartins2001-situ-kinetic-analysis-glyoxalase-i-2d2de0ea",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemargaridamartins2001-situ-kinetic-analysis-glyoxalase-i-2d2de0ea
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother