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Elowitz2000 - Repressilator This model describes the deterministic version of the repressilator system. The authors of this model (see reference) use three transcriptional repressor systems that are n.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_i_protein",
"label": "Initial C I Protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_c_i_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PZ`."
},
{
"name": "initial_tet_r_protein",
"label": "Initial Tet R Protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_tet_r_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PY`."
},
{
"name": "initial_lac_i_protein",
"label": "Initial Lac I Protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_lac_i_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PX`."
},
{
"name": "initial_tet_r_mrna",
"label": "Initial Tet R MRNA",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_tet_r_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
},
{
"name": "initial_c_i_mrna",
"label": "Initial C I MRNA",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_c_i_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Z`."
},
{
"name": "initial_lac_i_mrna",
"label": "Initial Lac I MRNA",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.initial_lac_i_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.species_labels"
},
{
"name": "c_i_protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.c_i_protein"
},
{
"name": "tet_r_protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.tet_r_protein"
},
{
"name": "lac_i_protein",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.lac_i_protein"
},
{
"name": "tet_r_mrna",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.tet_r_mrna"
},
{
"name": "c_i_mrna",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.c_i_mrna"
},
{
"name": "lac_i_mrna",
"maps_to": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.lac_i_mrna"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Elowitz2000 Repressilator Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_state"
],
"from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_summary"
],
"from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model_species_labels"
],
"from": "systemsbiology_sbml_elowitz2000_repressilator_biomd0000000012_model.species_labels"
}
],
"package": "elowitz2000-repressilator",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Elowitz2000 - Repressilator This model describes the deterministic version of the repressilator system. The authors of this model (see reference) use three transcriptional repressor systems that are n.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageelowitz2000-repressilator
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother