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This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glycolaldehyde",
"label": "Initial Glycolaldehyde",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_glycolaldehyde",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_gcald_c_`."
},
{
"name": "initial_glycolaldehyde_2",
"label": "Initial Glycolaldehyde 2",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_glycolaldehyde_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_gcald_e_`."
},
{
"name": "initial_d_td_pglucose",
"label": "Initial D Td Pglucose",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_d_td_pglucose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dtdpglu_c_`."
},
{
"name": "initial_d_tdp_4_dehydro_6_deoxy_d_glucose",
"label": "Initial D Tdp 4 Dehydro 6 Deoxy D Glucose",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_d_tdp_4_dehydro_6_deoxy_d_glucose",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dtdp4d6dg_c_`."
},
{
"name": "initial_d_atp",
"label": "Initial D ATP",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_d_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_datp_c_`."
},
{
"name": "initial_d_adp",
"label": "Initial D ADP",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.initial_d_adp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dadp_c_`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.species_labels"
},
{
"name": "glycolaldehyde",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.glycolaldehyde"
},
{
"name": "glycolaldehyde_2",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.glycolaldehyde_2"
},
{
"name": "d_td_pglucose",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.d_td_pglucose"
},
{
"name": "d_tdp_4_dehydro_6_deoxy_d_glucose",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.d_tdp_4_dehydro_6_deoxy_d_glucose"
},
{
"name": "d_atp",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.d_atp"
},
{
"name": "d_adp",
"maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.d_adp"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Feist2006 Methanogenesis Optimethanol Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model_state"
],
"from": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model_summary"
],
"from": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model_species_labels"
],
"from": "systemsbiology_sbml_feist2006_methanogenesis_optimethanol_biomd0000001098_model.species_labels"
}
],
"package": "feist2006-methanogenesis-optimethanol",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagefeist2006-methanogenesis-optimethanol
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother