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yeast mRNA translation. This the model from the article: A quantitative model for mRNA translation in Saccharomyces cerevisiae. It can be used to explore generegulation you2010 general yeast mrna translation dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "eif2_gdp",
"maps_to": "you2010_yeast_translation.eif2_gdp"
},
{
"name": "eif2b",
"maps_to": "you2010_yeast_translation.eif2b"
},
{
"name": "initiation_complex_43s",
"maps_to": "you2010_yeast_translation.initiation_complex_43s"
},
{
"name": "ribosome_mrna_complex",
"maps_to": "you2010_yeast_translation.ribosome_mrna_complex"
},
{
"name": "state",
"maps_to": "you2010_yeast_translation.state"
},
{
"name": "summary",
"maps_to": "you2010_yeast_translation.summary"
},
{
"name": "species_labels",
"maps_to": "you2010_yeast_translation.species_labels"
}
]
},
"title": "You2010 Yeast Translation Lab",
"models": [
{
"path": "models/core",
"alias": "you2010_yeast_translation",
"parameters": {
"model_path": "data/MODEL8459127548.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.you2010_yeast_translation_eif2_gdp"
],
"from": "you2010_yeast_translation.eif2_gdp"
},
{
"to": [
"visualisation.you2010_yeast_translation_eif2b"
],
"from": "you2010_yeast_translation.eif2b"
},
{
"to": [
"visualisation.you2010_yeast_translation_initiation_complex_43s"
],
"from": "you2010_yeast_translation.initiation_complex_43s"
},
{
"to": [
"visualisation.you2010_yeast_translation_ribosome_mrna_complex"
],
"from": "you2010_yeast_translation.ribosome_mrna_complex"
},
{
"to": [
"visualisation.you2010_yeast_translation_state"
],
"from": "you2010_yeast_translation.state"
},
{
"to": [
"visualisation.you2010_yeast_translation_summary"
],
"from": "you2010_yeast_translation.summary"
},
{
"to": [
"visualisation.you2010_yeast_translation_species_labels"
],
"from": "you2010_yeast_translation.species_labels"
}
],
"package": "you2010-yeast-translation",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "yeast mRNA translation. This the model from the article: A quantitative model for mRNA translation in Saccharomyces cerevisiae. It can be used to explore generegulation you2010 general yeast mrna translation dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageyou2010-yeast-translation
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother