Hynne2001 - Full Scale Glycolysis Saccharomyces Cerevisiae Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytosolic_glycogen",
        "label": "Initial Cytosolic Glycogen",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.initial_cytosolic_glycogen",
        "description": "Initial value for Cytosolic Glycogen. Maps to source symbol `Glyc`. Units: millimolar. Naming evidence: source metadata names `Glyc` as `cytosolic glycogen`.",
        "accepted_units": [
          "millimolar"
        ]
      },
      {
        "name": "initial_extracellular_glycogen",
        "label": "Initial Extracellular Glycogen",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.initial_extracellular_glycogen",
        "description": "Initial value for Extracellular Glycogen. Maps to source symbol `Glyc_x`. Units: millimolar. Naming evidence: source metadata names `Glyc_x` as `extracellular glycogen`.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.variable_labels"
      },
      {
        "name": "adenosine_triphosphate",
        "label": "Adenosine Triphosphate",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.adenosine_triphosphate",
        "description": "Adenosine Triphosphate. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source metadata names `ATP` as `adenosine triphosphate`."
      },
      {
        "name": "adenosine_diphosphate",
        "label": "Adenosine Diphosphate",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.adenosine_diphosphate",
        "description": "Adenosine Diphosphate. Maps to source symbol `ADP`. Units: millimolar. Naming evidence: source metadata names `ADP` as `adenosine diphosphate`."
      },
      {
        "name": "k3_atp",
        "label": "K3 ATP",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.k3_atp",
        "description": "K3 ATP. Maps to source symbol `K3_ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k10_adp",
        "label": "K10 ADP",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.k10_adp",
        "description": "K10 ADP. Maps to source symbol `K10_ADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cytosolic_acetaldehyde",
        "label": "Cytosolic Acetaldehyde",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.cytosolic_acetaldehyde",
        "description": "Cytosolic Acetaldehyde. Maps to source symbol `ACA`. Units: millimolar. Naming evidence: source metadata names `ACA` as `cytosolic acetaldehyde`."
      },
      {
        "name": "cytosolic_glucose",
        "label": "Cytosolic Glucose",
        "maps_to": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.cytosolic_glucose",
        "description": "Cytosolic Glucose. Maps to source symbol `Glc`. Units: millimolar. Naming evidence: source metadata names `Glc` as `cytosolic glucose`."
      }
    ]
  },
  "title": "Hynne2001 - Full Scale Glycolysis Saccharomyces Cerevisiae Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model",
      "parameters": {
        "model_path": "data/hynne_dano_sorensen_2001.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model_state"
      ],
      "from": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model_summary"
      ],
      "from": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model_trajectory"
      ],
      "from": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model_variable_labels"
      ],
      "from": "physiology_cellml_hynne_dano_sorensen_2001_hynnedanosorensen2001_model.variable_labels"
    }
  ],
  "package": "hynne2001-full-scale-glycolysis-saccharomyces-cerevisiae",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Hynne, Dano, Sorensen, 2001. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
  "schema_version": "2.0"
}