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Source-faithful physiology lab for Goodwin, 1965. Public controls and outputs are mapped to real source symbols for oscillatory physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_concentration_of_m_rna_of_the_ith_species",
"label": "Initial Concentration Of M RNA Of The Ith Species",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.initial_concentration_of_m_rna_of_the_ith_species",
"description": "Initial value for Concentration Of M RNA Of The Ith Species. Maps to source symbol `Xi`. Units: nanomolar. Naming evidence: source metadata names `Xi` as `concentration of mRNA of the ith species`.",
"accepted_units": [
"nanomolar"
]
},
{
"name": "initial_concentration_of_protein_of_the_ith_species",
"label": "Initial Concentration Of Protein Of The Ith Species",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.initial_concentration_of_protein_of_the_ith_species",
"description": "Initial value for Concentration Of Protein Of The Ith Species. Maps to source symbol `Yi`. Units: nanomolar. Naming evidence: source metadata names `Yi` as `concentration of protein of the ith species`.",
"accepted_units": [
"nanomolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.variable_labels"
},
{
"name": "intracellular_potassium_concentration",
"label": "Intracellular Potassium Concentration",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.intracellular_potassium_concentration",
"description": "Intracellular Potassium Concentration. Maps to source symbol `ki`. Units: per_nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "concentration_of_m_rna_of_the_ith_species",
"label": "Concentration Of M RNA Of The Ith Species",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.concentration_of_m_rna_of_the_ith_species",
"description": "Concentration Of M RNA Of The Ith Species. Maps to source symbol `Xi`. Units: nanomolar. Naming evidence: source metadata names `Xi` as `concentration of mRNA of the ith species`."
},
{
"name": "concentration_of_protein_of_the_ith_species",
"label": "Concentration Of Protein Of The Ith Species",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.concentration_of_protein_of_the_ith_species",
"description": "Concentration Of Protein Of The Ith Species. Maps to source symbol `Yi`. Units: nanomolar. Naming evidence: source metadata names `Yi` as `concentration of protein of the ith species`."
},
{
"name": "alpha_i",
"label": "Alpha I",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.alpha_i",
"description": "Alpha I. Maps to source symbol `alpha_i`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta_i",
"label": "Beta I",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.beta_i",
"description": "Beta I. Maps to source symbol `beta_i`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "xi_ai",
"label": "Xi Ai",
"maps_to": "physiology_cellml_goodwin_1965_goodwin1965_model.xi_ai",
"description": "Xi Ai. Maps to source symbol `Ai`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Goodwin1965 - Oscillatory Behavior Enzymatic Control Processes 1 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_goodwin_1965_goodwin1965_model",
"parameters": {
"model_path": "data/goodwin_1965_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_state"
],
"from": "physiology_cellml_goodwin_1965_goodwin1965_model.state"
},
{
"to": [
"visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_summary"
],
"from": "physiology_cellml_goodwin_1965_goodwin1965_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_trajectory"
],
"from": "physiology_cellml_goodwin_1965_goodwin1965_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_goodwin_1965_goodwin1965_model_variable_labels"
],
"from": "physiology_cellml_goodwin_1965_goodwin1965_model.variable_labels"
}
],
"package": "goodwin1965-oscillatory-behavior-enzymatic-control-processes-1",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Goodwin, 1965. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagegoodwin1965-oscillatory-behavior-enzymatic-control-processes-1
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother