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Single-model lab wrapper for Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release. Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/or act. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "model_state_d",
"label": "Model state D",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_d",
"description": "Tracks Model state D in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_d`."
},
{
"name": "model_state_ad",
"label": "Model state Ad",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_ad",
"description": "Tracks Model state Ad in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_ad`."
},
{
"name": "model_state_e",
"label": "Model state E",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_e",
"description": "Tracks Model state E in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_e`."
},
{
"name": "model_state_r_r",
"label": "Model state R (r)",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_r_r",
"description": "Tracks Model state R (r) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_r_r`."
},
{
"name": "model_state_rs",
"label": "Model state Rs",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_rs",
"description": "Tracks Model state Rs in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_rs`."
},
{
"name": "model_state_x_x",
"label": "Model state X (x)",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_x_x",
"description": "Tracks Model state X (x) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_x_x`."
},
{
"name": "ip3",
"label": "IP3",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.ip3",
"description": "Tracks IP3 in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.ip3`."
},
{
"name": "model_state_kg",
"label": "Model state Kg",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_kg",
"description": "Tracks Model state Kg in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_kg`."
},
{
"name": "gstar",
"label": "Gstar",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.gstar",
"description": "Tracks Gstar in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.gstar`."
},
{
"name": "model_state_ro",
"label": "Model state Ro",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_ro",
"description": "Tracks Model state Ro in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_ro`."
},
{
"name": "ip3con",
"label": "Ip3con",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.ip3con",
"description": "Tracks Ip3con in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.ip3con`."
},
{
"name": "rscon",
"label": "Rscon",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.rscon",
"description": "Tracks Rscon in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.rscon`."
},
{
"name": "atp",
"label": "ATP",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.atp",
"description": "Tracks ATP in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.atp`."
},
{
"name": "model_state_y_y",
"label": "Model state Y (y)",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_y_y",
"description": "Tracks Model state Y (y) in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.model_state_y_y`."
},
{
"name": "delta",
"label": "Delta",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.delta",
"description": "Tracks Delta in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.delta`."
},
{
"name": "calcium",
"label": "Calcium",
"maps_to": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.calcium",
"description": "Tracks Calcium in the lab model via `cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.calcium`."
}
]
},
"title": "Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release Lab",
"models": [
{
"path": "models/core",
"alias": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model_state"
],
"from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.state"
},
{
"to": [
"visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model_summary"
],
"from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.summary"
},
{
"to": [
"visualisation.cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model_species_labels"
],
"from": "cellcycle_sbml_barrack2014_calcium_cell_cycle_coupling_rs_depen_biomd0000000509_model.species_labels"
}
],
"package": "barrack2014-calcium-rs-atp",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release. Barrack2014 - Calcium/cell cycle coupling - Rs dependent ATP release This model is designed based on the hypothesis that cytoplasmic calcium accelerates entry into S phase of the cell cycle and/or act. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagebarrack2014-calcium-rs-atp
Created2026-05-15
Updated2026-06-13
cellcyclesbmlbiomodels_ebifaithfulvisualisationother