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Source-faithful physiology lab for Somogyi1990_CaOscillations. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_cyt",
"label": "Initial Ca Cyt",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.initial_ca_cyt",
"description": "Initial value for Ca Cyt. Maps to source symbol `y`. Units: native SBML value. Naming evidence: source metadata names `y` as `Ca_Cyt`."
},
{
"name": "initial_ca_er",
"label": "Initial Ca Er",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.initial_ca_er",
"description": "Initial value for Ca Er. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `Ca_ER`."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.species_labels"
},
{
"name": "ca_cyt",
"label": "Ca Cyt",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.ca_cyt",
"description": "Ca Cyt. Maps to source symbol `y`. Units: native SBML value. Naming evidence: source metadata names `y` as `Ca_Cyt`."
},
{
"name": "ca_er",
"label": "Ca Er",
"maps_to": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.ca_er",
"description": "Ca Er. Maps to source symbol `x`. Units: native SBML value. Naming evidence: source metadata names `x` as `Ca_ER`."
}
]
},
"title": "Somogyi1990 - Calcium Oscillations Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model",
"parameters": {
"model_path": "data/BIOMD0000000114.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_state"
],
"from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.state"
},
{
"to": [
"visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_summary"
],
"from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_trajectory"
],
"from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model_species_labels"
],
"from": "physiology_sbml_somogyi1990_caoscillations_biomd0000000114_model.species_labels"
}
],
"package": "somogyi1990-calcium-oscillations",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Somogyi1990_CaOscillations. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagesomogyi1990-calcium-oscillations
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother