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Source-faithful physiology lab for Chay1997_CalciumConcentration. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_v_membrane",
"label": "Initial V Membrane",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.initial_v_membrane",
"description": "Initial value for V Membrane. Maps to source symbol `V_membrane`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "initial_ca_i_cytosolic_calcium",
"label": "Initial Ca I Cytosolic Calcium",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.initial_ca_i_cytosolic_calcium",
"description": "Initial value for Ca I Cytosolic Calcium. Maps to source symbol `Ca_i_cytosolic_calcium`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.species_labels"
},
{
"name": "v_membrane",
"label": "V Membrane",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.v_membrane",
"description": "V Membrane. Maps to source symbol `V_membrane`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_i_cytosolic_calcium",
"label": "Ca I Cytosolic Calcium",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.ca_i_cytosolic_calcium",
"description": "Ca I Cytosolic Calcium. Maps to source symbol `Ca_i_cytosolic_calcium`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_lum",
"label": "Ca Lum",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.ca_lum",
"description": "Ca Lum. Maps to source symbol `Ca_lum`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_release_gate_h",
"label": "Calcium Release Gate H (source h)",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.calcium_release_gate_h",
"description": "Calcium Release Gate H (source h). Maps to source symbol `h`. Units: native SBML value. Naming evidence: calcium signalling context supports a conservative release-gate label."
},
{
"name": "model_state_d",
"label": "Model State D (source d)",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.model_state_d",
"description": "Model State D (source d). Maps to source symbol `d`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_n",
"label": "Model State N (source n)",
"maps_to": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.model_state_n",
"description": "Model State N (source n). Maps to source symbol `n`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Chay1997 - Calciumconcentration Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model",
"parameters": {
"model_path": "data/BIOMD0000000378.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_state"
],
"from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.state"
},
{
"to": [
"visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_summary"
],
"from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_trajectory"
],
"from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model_species_labels"
],
"from": "physiology_sbml_chay1997_calciumconcentration_biomd0000000378_model.species_labels"
}
],
"package": "chay1997-calciumconcentration",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Chay1997_CalciumConcentration. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagechay1997-calciumconcentration
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother