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Source-faithful physiology lab for Weinstein2000_OMCD. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_beta_p",
"label": "Initial Beta P",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.initial_beta_p",
"description": "Initial value for Beta P. Maps to source symbol `beta_p`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "initial_beta_pp",
"label": "Initial Beta Pp",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.initial_beta_pp",
"description": "Initial value for Beta Pp. Maps to source symbol `beta_pp`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.species_labels"
},
{
"name": "model_state_j_cl",
"label": "Model State J Cl (source J_Cl)",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.model_state_j_cl",
"description": "Model State J Cl (source J_Cl). Maps to source symbol `J_Cl`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_x_p",
"label": "Model State X P (source x_p)",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.model_state_x_p",
"description": "Model State X P (source x_p). Maps to source symbol `x_p`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_x_pp",
"label": "Model State X Pp (source x_pp)",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.model_state_x_pp",
"description": "Model State X Pp (source x_pp). Maps to source symbol `x_pp`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_x_t",
"label": "Model State X T (source x_T)",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.model_state_x_t",
"description": "Model State X T (source x_T). Maps to source symbol `x_T`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "beta_p",
"label": "Beta P",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.beta_p",
"description": "Beta P. Maps to source symbol `beta_p`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta_pp",
"label": "Beta Pp",
"maps_to": "physiology_sbml_weinstein2000_omcd_model1006230037_model.beta_pp",
"description": "Beta Pp. Maps to source symbol `beta_pp`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Weinstein2000 - Omcd Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_weinstein2000_omcd_model1006230037_model",
"parameters": {
"model_path": "data/MODEL1006230037.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_weinstein2000_omcd_model1006230037_model_state"
],
"from": "physiology_sbml_weinstein2000_omcd_model1006230037_model.state"
},
{
"to": [
"visualisation.physiology_sbml_weinstein2000_omcd_model1006230037_model_summary"
],
"from": "physiology_sbml_weinstein2000_omcd_model1006230037_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_weinstein2000_omcd_model1006230037_model_trajectory"
],
"from": "physiology_sbml_weinstein2000_omcd_model1006230037_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_weinstein2000_omcd_model1006230037_model_species_labels"
],
"from": "physiology_sbml_weinstein2000_omcd_model1006230037_model.species_labels"
}
],
"package": "weinstein2000-omcd",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Weinstein2000_OMCD. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageweinstein2000-omcd
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother