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Best2009 - Homeostatic mechanisms in dopaminesynthesis and release Encoded non-curated model. Issues: - Initial concentrations for hva, tyrpool, NADPH and NADP are missing - Reaction VMAT requires two.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tyrpool",
"label": "Initial Tyrpool",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_tyrpool",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tyrpool`."
},
{
"name": "initial_model_state_bh4",
"label": "Initial Model State BH4",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_bh4",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `bh4`."
},
{
"name": "initial_model_state_tyr",
"label": "Initial Model State Tyr",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_tyr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tyr`."
},
{
"name": "initial_btyr",
"label": "Initial Btyr",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_btyr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `btyr`."
},
{
"name": "initial_model_state_vda",
"label": "Initial Model State Vda",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_vda",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `vda`."
},
{
"name": "initial_model_state_bh2",
"label": "Initial Model State BH2",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.initial_model_state_bh2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `bh2`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.species_labels"
},
{
"name": "tyrpool",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.tyrpool"
},
{
"name": "bh4",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.bh4"
},
{
"name": "tyr",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.tyr"
},
{
"name": "btyr",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.btyr"
},
{
"name": "vda",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.vda"
},
{
"name": "bh2",
"maps_to": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.bh2"
}
]
},
"tags": [
"neuroscience",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Best2009 Homeostatic Mechanisms In Dopamine Synthesis And Release Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_state"
],
"from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_summary"
],
"from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model_species_labels"
],
"from": "systemsbiology_sbml_best2009_homeostatic_mechanisms_in_dopamine_synt_model1502230000_model.species_labels"
}
],
"package": "best2009-homeostatic-mechanisms-in-dopamine-synthesis-a-ff114e15",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Best2009 - Homeostatic mechanisms in dopaminesynthesis and release Encoded non-curated model. Issues: - Initial concentrations for hva, tyrpool, NADPH and NADP are missing - Reaction VMAT requires two.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebest2009-homeostatic-mechanisms-in-dopamine-synthesis-a-ff114e15
Created2026-05-17
Updated2026-06-13
neurosciencesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother