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Single-model lab wrapper for Zongo2020 - model of COVID-19 transmission dynamics under containment measures in France. The main objective of this paper is to address the following question: are the containment measures imposed by most of the world governments effective and sufficient to stop the epidemic of COVID-19 b. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_probability",
"label": "Transmission Probability",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.transmission_probability"
},
{
"name": "incubation_rate",
"label": "Incubation Rate",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.incubation_rate"
},
{
"name": "containment_quarantine_rate",
"label": "Containment Quarantine Rate",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.containment_quarantine_rate"
},
{
"name": "confinement_fraction",
"label": "Confinement Fraction",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.confinement_fraction"
},
{
"name": "unreported_infection_fraction",
"label": "Unreported Infection Fraction",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.unreported_infection_fraction"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.species_labels"
},
{
"name": "susceptible_unconfined",
"label": "Susceptible unconfined",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.susceptible_unconfined"
},
{
"name": "infected_unreported",
"label": "Infected unreported",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.infected_unreported"
},
{
"name": "susceptible_confined",
"label": "Susceptible confined",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.susceptible_confined"
},
{
"name": "exposed",
"label": "Exposed",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.exposed"
},
{
"name": "infected_reported",
"label": "Infected reported",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.infected_reported"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.recovered"
},
{
"name": "quarantined",
"label": "Quarantined",
"maps_to": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.quarantined"
}
]
},
"title": "Zongo2020 - model of COVID-19 transmission dynamics under containment measures in France Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model",
"parameters": {
"model_path": "data/BIOMD0000000983.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model_state"
],
"from": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model_summary"
],
"from": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model_species_labels"
],
"from": "epidemiology_sbml_zongo2020_model_of_covid_19_transmission_dynamic_biomd0000000983_model.species_labels"
}
],
"package": "zongo2020-covid-containment-france",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Zongo2020 - model of COVID-19 transmission dynamics under containment measures in France. The main objective of this paper is to address the following question: are the containment measures imposed by most of the world governments effective and sufficient to stop the epidemic of COVID-19 b. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagezongo2020-covid-containment-france
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother