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Curated microbiology lab for Talemi2016 - Yeast osmo-homoestasis. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "external_osmolarity",
"maps_to": "talemi2016_yeast_osmohomeostasis.external_osmolarity"
},
{
"name": "hog_pathway_signal",
"maps_to": "talemi2016_yeast_osmohomeostasis.hog_pathway_signal"
}
],
"outputs": [
{
"name": "state",
"maps_to": "talemi2016_yeast_osmohomeostasis.state"
},
{
"name": "summary",
"maps_to": "talemi2016_yeast_osmohomeostasis.summary"
},
{
"name": "species_labels",
"maps_to": "talemi2016_yeast_osmohomeostasis.species_labels"
},
{
"name": "intracellular_glycerol",
"maps_to": "talemi2016_yeast_osmohomeostasis.intracellular_glycerol"
},
{
"name": "osmotic_signal",
"maps_to": "talemi2016_yeast_osmohomeostasis.osmotic_signal"
},
{
"name": "phosphorylated_hog1_mapk",
"maps_to": "talemi2016_yeast_osmohomeostasis.phosphorylated_hog1_mapk"
},
{
"name": "phosphorylated_slt2_mapk",
"maps_to": "talemi2016_yeast_osmohomeostasis.phosphorylated_slt2_mapk"
}
]
},
"title": "Talemi2016 - Yeast osmo-homoestasis Lab",
"models": [
{
"path": "models/core",
"alias": "talemi2016_yeast_osmohomeostasis"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_state"
],
"from": "talemi2016_yeast_osmohomeostasis.state"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_summary"
],
"from": "talemi2016_yeast_osmohomeostasis.summary"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_species_labels"
],
"from": "talemi2016_yeast_osmohomeostasis.species_labels"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_intracellular_glycerol"
],
"from": "talemi2016_yeast_osmohomeostasis.intracellular_glycerol"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_osmotic_signal"
],
"from": "talemi2016_yeast_osmohomeostasis.osmotic_signal"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_phosphorylated_hog1_mapk"
],
"from": "talemi2016_yeast_osmohomeostasis.phosphorylated_hog1_mapk"
},
{
"to": [
"visualisation.talemi2016_yeast_osmohomeostasis_phosphorylated_slt2_mapk"
],
"from": "talemi2016_yeast_osmohomeostasis.phosphorylated_slt2_mapk"
}
],
"package": "talemi2016-yeast-osmohomeostasis",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Talemi2016 - Yeast osmo-homoestasis. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagetalemi2016-yeast-osmohomeostasis
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother