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yeast mRNA translation machinery. Firczuk2013 - Eukaryotic mRNA translation machinery This is a model of Saccharomyces cerevisiae mRNA translation which includes the initiation, elongation and termination phases. It can be used to explore generegulation firczuk2013 eukaryotic mrna translation machiner dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "mrna_cap",
"maps_to": "firczuk2013_eukaryotic_translation.mrna_cap"
},
{
"name": "initiation_complex_43s",
"maps_to": "firczuk2013_eukaryotic_translation.initiation_complex_43s"
},
{
"name": "eif2_gdp",
"maps_to": "firczuk2013_eukaryotic_translation.eif2_gdp"
},
{
"name": "eif2b",
"maps_to": "firczuk2013_eukaryotic_translation.eif2b"
},
{
"name": "state",
"maps_to": "firczuk2013_eukaryotic_translation.state"
},
{
"name": "summary",
"maps_to": "firczuk2013_eukaryotic_translation.summary"
},
{
"name": "species_labels",
"maps_to": "firczuk2013_eukaryotic_translation.species_labels"
}
]
},
"title": "Firczuk2013 Eukaryotic Translation Lab",
"models": [
{
"path": "models/core",
"alias": "firczuk2013_eukaryotic_translation",
"parameters": {
"model_path": "data/BIOMD0000000457.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_mrna_cap"
],
"from": "firczuk2013_eukaryotic_translation.mrna_cap"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_initiation_complex_43s"
],
"from": "firczuk2013_eukaryotic_translation.initiation_complex_43s"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_eif2_gdp"
],
"from": "firczuk2013_eukaryotic_translation.eif2_gdp"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_eif2b"
],
"from": "firczuk2013_eukaryotic_translation.eif2b"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_state"
],
"from": "firczuk2013_eukaryotic_translation.state"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_summary"
],
"from": "firczuk2013_eukaryotic_translation.summary"
},
{
"to": [
"visualisation.firczuk2013_eukaryotic_translation_species_labels"
],
"from": "firczuk2013_eukaryotic_translation.species_labels"
}
],
"package": "firczuk2013-eukaryotic-translation",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "yeast mRNA translation machinery. Firczuk2013 - Eukaryotic mRNA translation machinery This is a model of Saccharomyces cerevisiae mRNA translation which includes the initiation, elongation and termination phases. It can be used to explore generegulation firczuk2013 eukaryotic mrna translation machiner dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagefirczuk2013-eukaryotic-translation
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother