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Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_erk",
"label": "Initial ERK",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.initial_erk",
"description": "Initial level of ERK. Maps to SBML symbol `M`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "erk",
"label": "ERK",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.erk",
"description": "ERK. Maps to SBML symbol `M` and is emitted in native SBML units."
},
{
"name": "erk_py",
"label": "ERK PY",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.erk_py",
"description": "ERK PY. Maps to SBML symbol `MpY` and is emitted in native SBML units."
},
{
"name": "erk_pt",
"label": "ERK PT",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.erk_pt",
"description": "ERK PT. Maps to SBML symbol `MpT` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Markevich2004_MAPK_phosphoRandomElementary Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model_state"
],
"from": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.state"
},
{
"to": [
"visualisation.signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model_summary"
],
"from": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model_species_labels"
],
"from": "signaling_sbml_markevich2004_mapk_phosphorandomelementary_biomd0000000028_model.species_labels"
}
],
"package": "markevich2004-mapk-phosphorandomelementary",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemarkevich2004-mapk-phosphorandomelementary
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisationother