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Curated microbiology lab for Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "external_glucose",
"maps_to": "millard2020_ecoli_glucose_acetate.external_glucose"
},
{
"name": "extracellular_acetate_level",
"maps_to": "millard2020_ecoli_glucose_acetate.extracellular_acetate_level"
},
{
"name": "dilution_rate",
"maps_to": "millard2020_ecoli_glucose_acetate.dilution_rate"
},
{
"name": "feed_rate",
"maps_to": "millard2020_ecoli_glucose_acetate.feed_rate"
}
],
"outputs": [
{
"name": "state",
"maps_to": "millard2020_ecoli_glucose_acetate.state"
},
{
"name": "summary",
"maps_to": "millard2020_ecoli_glucose_acetate.summary"
},
{
"name": "species_labels",
"maps_to": "millard2020_ecoli_glucose_acetate.species_labels"
},
{
"name": "glucose",
"maps_to": "millard2020_ecoli_glucose_acetate.glucose"
},
{
"name": "acetate",
"maps_to": "millard2020_ecoli_glucose_acetate.acetate"
},
{
"name": "extracellular_acetate",
"maps_to": "millard2020_ecoli_glucose_acetate.extracellular_acetate"
},
{
"name": "input_regulator",
"maps_to": "millard2020_ecoli_glucose_acetate.input_regulator"
}
]
},
"title": "Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli Lab",
"models": [
{
"path": "models/core",
"alias": "millard2020_ecoli_glucose_acetate"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_state"
],
"from": "millard2020_ecoli_glucose_acetate.state"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_summary"
],
"from": "millard2020_ecoli_glucose_acetate.summary"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_species_labels"
],
"from": "millard2020_ecoli_glucose_acetate.species_labels"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_glucose"
],
"from": "millard2020_ecoli_glucose_acetate.glucose"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_acetate"
],
"from": "millard2020_ecoli_glucose_acetate.acetate"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_extracellular_acetate"
],
"from": "millard2020_ecoli_glucose_acetate.extracellular_acetate"
},
{
"to": [
"visualisation.millard2020_ecoli_glucose_acetate_input_regulator"
],
"from": "millard2020_ecoli_glucose_acetate.input_regulator"
}
],
"package": "millard2020-ecoli-glucose-acetate",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Millard2020 - Kinetic model of Glucose and Acetate metabolisms in E. coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagemillard2020-ecoli-glucose-acetate
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother