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Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tnf_receptor_level",
"label": "TNF receptor",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.initial_tnf_receptor_level",
"description": "TNF receptor source parameter. Maps to SBML symbol `TNF_R` and preserves the bundled default."
},
{
"name": "initial_tnf",
"label": "Initial TNF",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.initial_tnf",
"description": "Initial level of TNF. Maps to SBML symbol `TNF`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ikk_active",
"label": "IKK active",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.ikk_active",
"description": "IKK active. Maps to SBML symbol `IKK_active` and is emitted in native SBML units."
},
{
"name": "ikkactive_ik_b",
"label": "Ikkactive Ik B",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.ikkactive_ik_b",
"description": "Ikkactive Ik B. Maps to SBML symbol `IKKactive_IkB` and is emitted in native SBML units."
},
{
"name": "ikkactive_ik_b_nfkb",
"label": "Ikkactive Ik B NF-kB",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.ikkactive_ik_b_nfkb",
"description": "Ikkactive Ik B NF-kB. Maps to SBML symbol `IKKactive_IkB_NFKB` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"nfkb"
],
"title": "Benary2019 - Controlling NFKB dynamics by B-TrCP Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model_state"
],
"from": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.state"
},
{
"to": [
"visualisation.signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model_summary"
],
"from": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model_species_labels"
],
"from": "signaling_sbml_benary2019_controlling_nfkb_dynamics_by_b_trcp_biomd0000000794_model.species_labels"
}
],
"package": "benary2019-controlling-nfkb-dynamics-by-b-trcp",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebenary2019-controlling-nfkb-dynamics-by-b-trcp
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbvisualisationother