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The model reproduces the time profiles of Golgi Ras-GTP and plasma membrane Ras-GTP, subjected to a palmitoylation rate of 0.00015849 second inverse. This is depicted in Fig 5a and 5b for various palm.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ract_ca",
"label": "Initial Ract Ca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_ract_ca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RactCa`."
},
{
"name": "initial_ca_er",
"label": "Initial Ca Er",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_ca_er",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_ER`."
},
{
"name": "initial_serca",
"label": "Initial Serca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_serca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `serca`."
},
{
"name": "initial_capri_cyt",
"label": "Initial Capri Cyt",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_capri_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CAPRI_cyt`."
},
{
"name": "initial_rinh_ca",
"label": "Initial Rinh Ca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_rinh_ca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RinhCa`."
},
{
"name": "initial_ras_ca_pl_ce_gm",
"label": "Initial RAS Ca Pl Ce Gm",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.initial_ras_ca_pl_ce_gm",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_CaPLCe_GM`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.species_labels"
},
{
"name": "ract_ca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.ract_ca"
},
{
"name": "ca_er",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.ca_er"
},
{
"name": "serca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.serca"
},
{
"name": "capri_cyt",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.capri_cyt"
},
{
"name": "rinh_ca",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.rinh_ca"
},
{
"name": "ras_ca_pl_ce_gm",
"maps_to": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.ras_ca_pl_ce_gm"
}
]
},
"tags": [
"cellcycle",
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Eungdamrong2007 Ras Activation Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model_state"
],
"from": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model_summary"
],
"from": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model_species_labels"
],
"from": "systemsbiology_sbml_eungdamrong2007_ras_activation_biomd0000000161_model.species_labels"
}
],
"package": "eungdamrong2007-ras-activation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "The model reproduces the time profiles of Golgi Ras-GTP and plasma membrane Ras-GTP, subjected to a palmitoylation rate of 0.00015849 second inverse. This is depicted in Fig 5a and 5b for various palm.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageeungdamrong2007-ras-activation
Created2026-05-17
Updated2026-06-13
cellcyclesignalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother