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This model represents NIK-dependent p100 processing into p52 with Michaelis-Menten kinetics. While this model shows identical dose-response to the mass action representation, when IkBd degradation is.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_p100_pool",
"label": "Initial P100 Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.initial_p100_pool"
},
{
"name": "initial_nik_pool",
"label": "Initial NIK Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.initial_nik_pool"
},
{
"name": "total_p100_boundary_pool",
"label": "Total P100 Boundary Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.total_p100_boundary_pool"
}
],
"outputs": [
{
"name": "state",
"label": "Tracked source state",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.species_labels"
},
{
"name": "p100_pool",
"label": "P100 Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.p100_pool"
},
{
"name": "p52_pool",
"label": "P52 Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.p52_pool"
},
{
"name": "nik_pool",
"label": "NIK Pool",
"maps_to": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.nik_pool"
}
]
},
"tags": [
"pharmacology",
"signaling",
"immunology",
"nfkb",
"sbml",
"tellurium",
"faithful",
"biomodels_ebi"
],
"title": "Simon2019 - NIK-dependent p100 processing into p52, Michaelis-Menten, SBML 2v4 Lab",
"models": [
{
"path": "models/core",
"alias": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model",
"parameters": {
"model_path": "data/BIOMD0000000866.xml",
"integration_step": 0.2
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model_state"
],
"from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.state"
},
{
"to": [
"visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model_summary"
],
"from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.summary"
},
{
"to": [
"visualisation.pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model_species_labels"
],
"from": "pharmacology_sbml_simon2019_nik_dependent_p100_processing_into_p52_biomd0000000866_model.species_labels"
}
],
"package": "simon2019-nik-p100-p52-michaelis",
"runtime": {
"duration": 60,
"initial_inputs": {},
"communication_step": 2
},
"version": "1.0.0",
"description": "This model represents NIK-dependent p100 processing into p52 with Michaelis-Menten kinetics. While this model shows identical dose-response to the mass action representation, when IkBd degradation is.",
"schema_version": "2.0"
}Runtime
Duration60
Comms Step2
Runs
Total0
Completed0
Failed0
Metadata
Packagesimon2019-nik-p100-p52-michaelis
Created2026-05-16
Updated2026-06-13
pharmacologysignalingimmunologynfkbsbmltelluriumfaithfulbiomodels_ebivisualisationother