Novak1998 - Mathematical Fission Yeast Cell Cycle Checkpoint Controls Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_aae",
        "label": "Initial Aae",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.initial_aae",
        "description": "Initial value for Aae. Maps to source symbol `AAE`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_aae_total",
        "label": "Initial Aae Total",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.initial_aae_total",
        "description": "Initial value for Aae Total. Maps to source symbol `AAE_total`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.variable_labels"
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `ki`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "aae",
        "label": "Aae",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.aae",
        "description": "Aae. Maps to source symbol `AAE`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "aae_total",
        "label": "Aae Total",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.aae_total",
        "description": "Aae Total. Maps to source symbol `AAE_total`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "apc",
        "label": "Apc",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.apc",
        "description": "Apc. Maps to source symbol `APC`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdc13_cdc2",
        "label": "Cdc13 Cdc2",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.cdc13_cdc2",
        "description": "Cdc13 Cdc2. Maps to source symbol `Cdc13_Cdc2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cdc13_p_cdc2",
        "label": "Cdc13 P Cdc2",
        "maps_to": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.cdc13_p_cdc2",
        "description": "Cdc13 P Cdc2. Maps to source symbol `Cdc13_P_Cdc2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Novak1998 - Mathematical Fission Yeast Cell Cycle Checkpoint Controls Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model",
      "parameters": {
        "model_path": "data/novak_csikasznagy_gyorffy_chen_tyson_1998.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model_state"
      ],
      "from": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model_summary"
      ],
      "from": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model_trajectory"
      ],
      "from": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model_variable_labels"
      ],
      "from": "physiology_cellml_novak_csikasznagy_gyorffy_chen_tyson_1998_novakcsikasznagygyorffychentyson1998_model.variable_labels"
    }
  ],
  "package": "novak1998-mathematical-fission-yeast-cell-cycle-checkpo-cbc7bb05",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Novak, Csikasznagy, Gyorffy, Chen, Tyson, 1998. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}