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Created by The MathWorks, Inc. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tumor_necrosis_factor",
"label": "Initial Tumor Necrosis Factor",
"units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
"default": 1.5,
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tumor_necrosis_factor",
"description": "Initial Tumor Necrosis Factor. Sets the initial value of bundled SBML species `mw4d2e70a7_f499_461d_ae18_bc53b365b091`."
},
{
"name": "initial_tnf_receptor_1",
"label": "Initial Tnf Receptor 1",
"units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
"default": 1.3,
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tnf_receptor_1",
"description": "Initial Tnf Receptor 1. Sets the initial value of bundled SBML species `mw8cc67de0_64e6_428f_ab09_4c2825cc172c`."
},
{
"name": "initial_tradd_traf2_rip_complex",
"label": "Initial Tradd Traf2 Rip Complex",
"units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
"default": 1.3,
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_tradd_traf2_rip_complex",
"description": "Initial Tradd Traf2 Rip Complex. Sets the initial value of bundled SBML species `mw6ee00a71_ab68_454b_b1cd_60c1ebd19cfa`."
},
{
"name": "initial_unresolved_infection_observable_1",
"label": "Initial Unresolved Infection Observable 1",
"units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
"default": 0.8,
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_unresolved_infection_observable_1",
"description": "Initial Unresolved Infection Observable 1. Sets the initial value of bundled SBML species `mw2dc73059_a841_48d5_b4bd_3ac24d94c42e`."
},
{
"name": "initial_unresolved_infection_observable_2",
"label": "Initial Unresolved Infection Observable 2",
"units": "MWBUILTINPREFIX_nano_MWBUILTINUNIT_mole",
"default": 1.5,
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.initial_unresolved_infection_observable_2",
"description": "Initial Unresolved Infection Observable 2. Sets the initial value of bundled SBML species `mw136c8391_14f4_4a28_83a3_35cc74a2e040`."
}
],
"outputs": [
{
"name": "tumor_necrosis_factor",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tumor_necrosis_factor"
},
{
"name": "tnf_receptor_1",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tnf_receptor_1"
},
{
"name": "tradd_traf2_rip_complex",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.tradd_traf2_rip_complex"
},
{
"name": "unresolved_infection_observable_1",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.unresolved_infection_observable_1"
},
{
"name": "unresolved_infection_observable_2",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.unresolved_infection_observable_2"
},
{
"name": "state",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.state"
},
{
"name": "summary",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.summary"
},
{
"name": "species_labels",
"maps_to": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.species_labels"
}
]
},
"title": "Mol2013 - Immune Signal Transduction in Leishmaniasis Lab",
"models": [
{
"path": "models/core",
"alias": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_state"
],
"from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.state"
},
{
"to": [
"visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_summary"
],
"from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.summary"
},
{
"to": [
"visualisation.immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model_species_labels"
],
"from": "immunology_sbml_mol2013_immune_signal_transduction_in_leishmania_biomd0000000477_model.species_labels"
}
],
"package": "mol2013-immune-signal-transduction-in-leishmaniasis",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Created by The MathWorks, Inc. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagemol2013-immune-signal-transduction-in-leishmaniasis
Created2026-05-15
Updated2026-06-13
immunologysbmlbiomodels_ebifaithfulcuratedvisualisationother