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Source-faithful physiology lab for Miftakhov, Abdusheva, Christensen, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_concentration",
"label": "Initial Calcium Concentration",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.initial_calcium_concentration",
"description": "Initial value for Calcium Concentration. Maps to source symbol `Ca`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millimolar"
]
},
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.variable_labels"
},
{
"name": "calcium_concentration",
"label": "Calcium Concentration",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.calcium_concentration",
"description": "Calcium Concentration. Maps to source symbol `Ca`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "concentration_k_c",
"label": "Concentration K C (source K_c)",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.concentration_k_c",
"description": "Concentration K C (source K_c). Maps to source symbol `K_c`. Units: millimolar_per_millivolt. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "potassium_conductance",
"label": "Potassium Conductance",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.potassium_conductance",
"description": "Potassium Conductance. Maps to source symbol `g_Ca_K`. Units: milliS_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_current_i_ca_k",
"label": "Potassium Current I Ca K",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.potassium_current_i_ca_k",
"description": "Potassium Current I Ca K. Maps to source symbol `i_Ca_K`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rho",
"label": "Rho",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.rho",
"description": "Rho. Maps to source symbol `rho`. Units: per_millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Miftakhov1999 - Numerical Simulation Motility Patterns Small Bowel 1 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model",
"parameters": {
"model_path": "data/miftakhov_abdusheva_christensen_1999.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_state"
],
"from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.state"
},
{
"to": [
"visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_summary"
],
"from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_trajectory"
],
"from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model_variable_labels"
],
"from": "physiology_cellml_miftakhov_abdusheva_christensen_1999_miftakhovabdushevachristensen1999_model.variable_labels"
}
],
"package": "miftakhov1999-numerical-simulation-motility-patterns-sm-c0247912",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Miftakhov, Abdusheva, Christensen, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemiftakhov1999-numerical-simulation-motility-patterns-sm-c0247912
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother