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Two-cell pancreas endocrine/exocrine lineage specification model executed directly from bundled SBML.
Manifest
{
"io": {
"inputs": [
{
"name": "starting_first_cell_first_fate_signal",
"label": "Starting first-cell first-fate signal",
"units": "native SBML value",
"default": 0,
"maps_to": "deback2012_pancreas_lineage.starting_first_cell_first_fate_signal",
"description": "Setup-time initial value for the first lineage signal in neighboring cell i. Maps to SBML symbol `species_1` (`Xi`)."
},
{
"name": "starting_first_cell_second_fate_signal",
"label": "Starting first-cell second-fate signal",
"units": "native SBML value",
"default": 0,
"maps_to": "deback2012_pancreas_lineage.starting_first_cell_second_fate_signal",
"description": "Setup-time initial value for the second lineage signal in neighboring cell i. Maps to SBML symbol `species_2` (`Yi`)."
},
{
"name": "starting_second_cell_first_fate_signal",
"label": "Starting second-cell first-fate signal",
"units": "native SBML value",
"default": 0,
"maps_to": "deback2012_pancreas_lineage.starting_second_cell_first_fate_signal",
"description": "Setup-time initial value for the first lineage signal in neighboring cell j. Maps to SBML symbol `species_3` (`Xj`)."
},
{
"name": "starting_second_cell_second_fate_signal",
"label": "Starting second-cell second-fate signal",
"units": "native SBML value",
"default": 0,
"maps_to": "deback2012_pancreas_lineage.starting_second_cell_second_fate_signal",
"description": "Setup-time initial value for the second lineage signal in neighboring cell j. Maps to SBML symbol `species_4` (`Yj`)."
}
],
"outputs": [
{
"name": "cell_i_first_lineage_signal",
"label": "Cell i first lineage signal",
"maps_to": "deback2012_pancreas_lineage.cell_i_first_lineage_signal",
"description": "Cell i first lineage signal. Maps to SBML symbol `species_1`."
},
{
"name": "cell_i_second_lineage_signal",
"label": "Cell i second lineage signal",
"maps_to": "deback2012_pancreas_lineage.cell_i_second_lineage_signal",
"description": "Cell i second lineage signal. Maps to SBML symbol `species_2`."
},
{
"name": "cell_j_first_lineage_signal",
"label": "Cell j first lineage signal",
"maps_to": "deback2012_pancreas_lineage.cell_j_first_lineage_signal",
"description": "Cell j first lineage signal. Maps to SBML symbol `species_3`."
},
{
"name": "cell_j_second_lineage_signal",
"label": "Cell j second lineage signal",
"maps_to": "deback2012_pancreas_lineage.cell_j_second_lineage_signal",
"description": "Cell j second lineage signal. Maps to SBML symbol `species_4`."
},
{
"name": "state",
"maps_to": "deback2012_pancreas_lineage.state",
"description": "Full friendly observable record."
},
{
"name": "summary",
"maps_to": "deback2012_pancreas_lineage.summary",
"description": "Core model run summary."
},
{
"name": "species_labels",
"maps_to": "deback2012_pancreas_lineage.species_labels",
"description": "Friendly observable display labels."
}
]
},
"title": "deBack2012 Pancreas Lineage Specification Lab",
"models": [
{
"path": "models/core",
"alias": "deback2012_pancreas_lineage",
"parameters": {
"model_path": "data/BIOMD0000000435.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.core_state"
],
"from": "deback2012_pancreas_lineage.state"
},
{
"to": [
"visualisation.core_summary"
],
"from": "deback2012_pancreas_lineage.summary"
},
{
"to": [
"visualisation.core_species_labels"
],
"from": "deback2012_pancreas_lineage.species_labels"
}
],
"package": "deback2012-pancreas-lineage-specification",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Two-cell pancreas endocrine/exocrine lineage specification model executed directly from bundled SBML.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagedeback2012-pancreas-lineage-specification
Created2026-05-15
Updated2026-06-13
developmentsbmltelluriumfaithfulvisualisationother