About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
NF-kB dependent transcription. Model taken from Ashall et al., Science, 2009 (http://www.sciencemag.org/content/324/5924/242.long). It can be used to explore generegulation ashall2009 nfkappab dependent transcription model1509020000 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "nuclear_nfkb",
"maps_to": "ashall2009_nfkb_transcription.nuclear_nfkb"
},
{
"name": "nfkb",
"maps_to": "ashall2009_nfkb_transcription.nfkb"
},
{
"name": "ikba_transcript",
"maps_to": "ashall2009_nfkb_transcription.ikba_transcript"
},
{
"name": "a20_transcript",
"maps_to": "ashall2009_nfkb_transcription.a20_transcript"
},
{
"name": "state",
"maps_to": "ashall2009_nfkb_transcription.state"
},
{
"name": "summary",
"maps_to": "ashall2009_nfkb_transcription.summary"
},
{
"name": "species_labels",
"maps_to": "ashall2009_nfkb_transcription.species_labels"
}
]
},
"title": "Ashall2009 Nfkb Transcription Lab",
"models": [
{
"path": "models/core",
"alias": "ashall2009_nfkb_transcription",
"parameters": {
"model_path": "data/MODEL1509020000.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.ashall2009_nfkb_transcription_nuclear_nfkb"
],
"from": "ashall2009_nfkb_transcription.nuclear_nfkb"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_nfkb"
],
"from": "ashall2009_nfkb_transcription.nfkb"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_ikba_transcript"
],
"from": "ashall2009_nfkb_transcription.ikba_transcript"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_a20_transcript"
],
"from": "ashall2009_nfkb_transcription.a20_transcript"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_state"
],
"from": "ashall2009_nfkb_transcription.state"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_summary"
],
"from": "ashall2009_nfkb_transcription.summary"
},
{
"to": [
"visualisation.ashall2009_nfkb_transcription_species_labels"
],
"from": "ashall2009_nfkb_transcription.species_labels"
}
],
"package": "ashall2009-nfkb-transcription",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "NF-kB dependent transcription. Model taken from Ashall et al., Science, 2009 (http://www.sciencemag.org/content/324/5924/242.long). It can be used to explore generegulation ashall2009 nfkappab dependent transcription model1509020000 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageashall2009-nfkb-transcription
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother