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This model is described in the paper Toward a detailed computational model for the mammalian circadian clock . In this model only interlocked negative and positive regulation of Per, Cry, Bmal gene ar.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_mb",
"label": "Initial Model State Mb",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mb",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_0`."
},
{
"name": "initial_model_state_mp",
"label": "Initial Model State Mp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
},
{
"name": "initial_model_state_bc",
"label": "Initial Model State Bc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_bc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
},
{
"name": "initial_model_state_bn",
"label": "Initial Model State Bn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_bn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
},
{
"name": "initial_model_state_mc",
"label": "Initial Model State Mc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_model_state_mc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_5`."
},
{
"name": "initial_p_cn",
"label": "Initial P Cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.initial_p_cn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_12`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.species_labels"
},
{
"name": "model_state_mb",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mb"
},
{
"name": "model_state_mp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mp"
},
{
"name": "model_state_bc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_bc"
},
{
"name": "model_state_bn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_bn"
},
{
"name": "model_state_mc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.model_state_mc"
},
{
"name": "p_cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.p_cn"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Leloup2003 Circclock Ld Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_state"
],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_summary"
],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model_species_labels"
],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_biomd0000000078_model.species_labels"
}
],
"package": "leloup2003-circclock-ld",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is described in the paper Toward a detailed computational model for the mammalian circadian clock . In this model only interlocked negative and positive regulation of Per, Cry, Bmal gene ar.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageleloup2003-circclock-ld
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother