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Source-faithful physiology lab for Corrias2008_GastricSlowWaveActivity. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp4_i",
"label": "Initial Atp4 I",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.initial_atp4_i",
"description": "Initial value for Atp4 I. Maps to source symbol `ATP4_i`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "initial_atp4_m",
"label": "Initial Atp4 M",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.initial_atp4_m",
"description": "Initial value for Atp4 M. Maps to source symbol `ATP4_m`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.species_labels"
},
{
"name": "model_state_a_f1",
"label": "Model State A F1 (source A_F1)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_a_f1",
"description": "Model State A F1 (source A_F1). Maps to source symbol `A_F1`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_d_bk",
"label": "Model State D Bk (source d_BK)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_d_bk",
"description": "Model State D Bk (source d_BK). Maps to source symbol `d_BK`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_d_na",
"label": "Model State D Na (source d_Na)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_d_na",
"description": "Model State D Na (source d_Na). Maps to source symbol `d_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_e_cl",
"label": "Model State E Cl (source E_Cl)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_e_cl",
"description": "Model State E Cl (source E_Cl). Maps to source symbol `E_Cl`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_e_na",
"label": "Model State E Na (source E_Na)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_e_na",
"description": "Model State E Na (source E_Na). Maps to source symbol `E_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_f_na",
"label": "Model State F Na (source f_Na)",
"maps_to": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.model_state_f_na",
"description": "Model State F Na (source f_Na). Maps to source symbol `f_Na`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Corrias2008 - Gastricslowwaveactivity Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model",
"parameters": {
"model_path": "data/MODEL0913095435.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_state"
],
"from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.state"
},
{
"to": [
"visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_summary"
],
"from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_trajectory"
],
"from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model_species_labels"
],
"from": "physiology_sbml_corrias2008_gastricslowwaveactivity_model0913095435_model.species_labels"
}
],
"package": "corrias2008-gastricslowwaveactivity",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Corrias2008_GastricSlowWaveActivity. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagecorrias2008-gastricslowwaveactivity
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother