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Smallbone2013 - Colon Crypt cycle - Version 1 This model is described in the article: A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types Kieran Sma. It can be used to explore systemsbiology smallbone2013 colon crypt cycle version dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_n2",
"label": "Initial Model State N2",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.initial_model_state_n2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `N2`."
},
{
"name": "initial_model_state_n1",
"label": "Initial Model State N1",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.initial_model_state_n1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `N1`."
},
{
"name": "initial_model_state_n0",
"label": "Initial Model State N0",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.initial_model_state_n0",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `N0`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.species_labels"
},
{
"name": "model_state_n2",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.model_state_n2"
},
{
"name": "model_state_n1",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.model_state_n1"
},
{
"name": "model_state_n0",
"maps_to": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.model_state_n0"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Smallbone2013 Colon Crypt Cycle Version 1 Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model_state"
],
"from": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model_summary"
],
"from": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model_species_labels"
],
"from": "systemsbiology_sbml_smallbone2013_colon_crypt_cycle_version_1_biomd0000000519_model.species_labels"
}
],
"package": "smallbone2013-colon-crypt-cycle-version-1",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Smallbone2013 - Colon Crypt cycle - Version 1 This model is described in the article: A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types Kieran Sma. It can be used to explore systemsbiology smallbone2013 colon crypt cycle version dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesmallbone2013-colon-crypt-cycle-version-1
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother