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Source-faithful physiology lab for Cloutier Wellstead 2009. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp_concentration",
"label": "Initial ATP Concentration",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.initial_atp_concentration",
"description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
},
{
"name": "initial_f26_p",
"label": "Initial F26 P",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.initial_f26_p",
"description": "Initial value for F26 P. Maps to source symbol `F26P`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.variable_labels"
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "atp_inh",
"label": "ATP Inh",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.atp_inh",
"description": "ATP Inh. Maps to source symbol `ATP_inh`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "d_amp_d_atp",
"label": "D Amp D ATP",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.d_amp_d_atp",
"description": "D Amp D ATP. Maps to source symbol `dAMP_dATP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ki_atp",
"label": "Ki ATP",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.ki_atp",
"description": "Ki ATP. Maps to source symbol `KI_ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "km_atp",
"label": "Km ATP",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.km_atp",
"description": "Km ATP. Maps to source symbol `Km_ATP`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "km_atp_hk",
"label": "Km ATP Hk",
"maps_to": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.km_atp_hk",
"description": "Km ATP Hk. Maps to source symbol `Km_ATP_hk`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Cloutier2009 - Wellstead Brain Energy Metabolism Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model",
"parameters": {
"model_path": "data/cloutier_2009_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_state"
],
"from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.state"
},
{
"to": [
"visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_summary"
],
"from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_trajectory"
],
"from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model_variable_labels"
],
"from": "physiology_cellml_cloutier_wellstead_2009_cloutierwellstead2009_model.variable_labels"
}
],
"package": "cloutier2009-wellstead-brain-energy-metabolism",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Cloutier Wellstead 2009. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagecloutier2009-wellstead-brain-energy-metabolism
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother