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Source-faithful physiology lab for Jelic, Cupic, Kolaranic, 2005. Public controls and outputs are mapped to real source symbols for transport physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_acth",
"label": "Initial Acth",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.initial_acth",
"description": "Initial value for Acth. Maps to source symbol `a`. Units: dimensionless. Naming evidence: source metadata names `a` as `ACTH`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_cortisol",
"label": "Initial Cortisol",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.initial_cortisol",
"description": "Initial value for Cortisol. Maps to source symbol `g`. Units: dimensionless. Naming evidence: source metadata names `g` as `cortisol`.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.variable_labels"
},
{
"name": "acth",
"label": "Acth",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.acth",
"description": "Acth. Maps to source symbol `a`. Units: dimensionless. Naming evidence: source metadata names `a` as `ACTH`."
},
{
"name": "cortisol",
"label": "Cortisol",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.cortisol",
"description": "Cortisol. Maps to source symbol `g`. Units: dimensionless. Naming evidence: source metadata names `g` as `cortisol`."
},
{
"name": "alpha",
"label": "Alpha",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.alpha",
"description": "Alpha. Maps to source symbol `alpha`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_1_concentration",
"label": "C 1 Concentration",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.c_1_concentration",
"description": "C 1 Concentration. Maps to source symbol `C_1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_2_concentration",
"label": "C 2 Concentration",
"maps_to": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.c_2_concentration",
"description": "C 2 Concentration. Maps to source symbol `C_2`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Jelic2005 - Hypothalamic Pituitary Adrenal Axis Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model",
"parameters": {
"model_path": "data/jelic_cupic_kolaranic_2005.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_state"
],
"from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.state"
},
{
"to": [
"visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_summary"
],
"from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_trajectory"
],
"from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model_variable_labels"
],
"from": "physiology_cellml_jelic_cupic_kolaranic_2005_jeliccupickolaranic2005_model.variable_labels"
}
],
"package": "jelic2005-hypothalamic-pituitary-adrenal-axis",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Jelic, Cupic, Kolaranic, 2005. Public controls and outputs are mapped to real source symbols for transport physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagejelic2005-hypothalamic-pituitary-adrenal-axis
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother