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Source-faithful physiology lab for Wodarz, 2003. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_i_1",
"label": "Initial Model State I 1 (source I_1)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.initial_model_state_i_1",
"description": "Initial value for Model State I 1 (source I_1). Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_model_state_i_12",
"label": "Initial Model State I 12 (source I_12)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.initial_model_state_i_12",
"description": "Initial value for Model State I 12 (source I_12). Maps to source symbol `I_12`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.variable_labels"
},
{
"name": "model_state_i_1",
"label": "Model State I 1 (source I_1)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_1",
"description": "Model State I 1 (source I_1). Maps to source symbol `I_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_i_12",
"label": "Model State I 12 (source I_12)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_12",
"description": "Model State I 12 (source I_12). Maps to source symbol `I_12`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_i_2",
"label": "Model State I 2 (source I_2)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_2",
"description": "Model State I 2 (source I_2). Maps to source symbol `I_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_i_21",
"label": "Model State I 21 (source I_21)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_i_21",
"description": "Model State I 21 (source I_21). Maps to source symbol `I_21`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_p_1",
"label": "Model State P 1 (source P_1)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_p_1",
"description": "Model State P 1 (source P_1). Maps to source symbol `P_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
},
{
"name": "model_state_p_2",
"label": "Model State P 2 (source P_2)",
"maps_to": "physiology_cellml_wodarz_2003_wodarz2003_model.model_state_p_2",
"description": "Model State P 2 (source P_2). Maps to source symbol `P_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
}
]
},
"title": "Wodarz2003 - 2nd Mathematical Evolution Immunological Memory Regulation Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_wodarz_2003_wodarz2003_model",
"parameters": {
"model_path": "data/wodarz_2003.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_state"
],
"from": "physiology_cellml_wodarz_2003_wodarz2003_model.state"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_summary"
],
"from": "physiology_cellml_wodarz_2003_wodarz2003_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_trajectory"
],
"from": "physiology_cellml_wodarz_2003_wodarz2003_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_wodarz_2003_wodarz2003_model_variable_labels"
],
"from": "physiology_cellml_wodarz_2003_wodarz2003_model.variable_labels"
}
],
"package": "wodarz2003-2nd-mathematical-evolution-immunological-mem-9fce800a",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Wodarz, 2003. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagewodarz2003-2nd-mathematical-evolution-immunological-mem-9fce800a
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother