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This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_decarb_sam",
"label": "Initial Decarb Sam",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_decarb_sam",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Decarb_SAM`."
},
{
"name": "initial_pfs_mrna",
"label": "Initial Pfs MRNA",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_pfs_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pfs_mRNA`."
},
{
"name": "initial_lux_s_mrna",
"label": "Initial Lux S MRNA",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_lux_s_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LuxS_mRNA`."
},
{
"name": "initial_pfs_gene",
"label": "Initial Pfs Gene",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_pfs_gene",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pfs_gene`."
},
{
"name": "initial_lux_s_gene",
"label": "Initial Lux S Gene",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_lux_s_gene",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LuxS_gene`."
},
{
"name": "initial_nutrients",
"label": "Initial Nutrients",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.initial_nutrients",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Nutrients`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.species_labels"
},
{
"name": "decarb_sam",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.decarb_sam"
},
{
"name": "pfs_mrna",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.pfs_mrna"
},
{
"name": "lux_s_mrna",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.lux_s_mrna"
},
{
"name": "pfs_gene",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.pfs_gene"
},
{
"name": "lux_s_gene",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.lux_s_gene"
},
{
"name": "nutrients",
"maps_to": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.nutrients"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Url Xml 3 Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_state"
],
"from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_summary"
],
"from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_model8262229752_url_xml_model8262229752_model_species_labels"
],
"from": "systemsbiology_sbml_model8262229752_url_xml_model8262229752_model.species_labels"
}
],
"package": "url-xml-3",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2011 The BioModels.net Team.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageurl-xml-3
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother