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Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_kd_calcium_n_ca2_calcium_level",
"label": "Kd calcium N Ca2 calcium",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kd_calcium_n_ca2_calcium_level",
"description": "Kd calcium N Ca2 calcium source parameter. Maps to SBML symbol `parameter_6` and preserves the bundled default."
},
{
"name": "initial_kd_calcium_n_rr_level",
"label": "Kd calcium N RR",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kd_calcium_n_rr_level",
"description": "Kd calcium N RR source parameter. Maps to SBML symbol `Kd_PP2BCa2_RR` and preserves the bundled default."
},
{
"name": "initial_kon_calcium_n_rr_level",
"label": "Kon calcium N RR",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.initial_kon_calcium_n_rr_level",
"description": "Kon calcium N RR source parameter. Maps to SBML symbol `kon_PP2BCa2` and preserves the bundled default."
}
],
"outputs": [
{
"name": "calcium_m_rr_0_0",
"label": "calcium M RR 0 0",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_0",
"description": "calcium M RR 0 0. Maps to SBML symbol `cam_RR_0_0` and is emitted in native SBML units."
},
{
"name": "calcium_m_rr_0_calcium_nca4",
"label": "calcium M RR 0 calcium Nca4",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_calcium_nca4",
"description": "calcium M RR 0 calcium Nca4. Maps to SBML symbol `cam_RR_0_PP2BCa2` and is emitted in native SBML units."
},
{
"name": "calcium_m_rr_0_calcium_mkii",
"label": "calcium M RR 0 calcium MKII",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.calcium_m_rr_0_calcium_mkii",
"description": "calcium M RR 0 calcium MKII. Maps to SBML symbol `cam_RR_0_CaMKII` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"calcium-signaling",
"neuroscience",
"physiology"
],
"title": "Li2019 - Neurogranin stimulates Ca/calmodulin-dependent kinase II by inhibiting Calcineurin Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_state"
],
"from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_summary"
],
"from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model_species_labels"
],
"from": "signaling_sbml_li2019_neurogranin_stimulates_ca_calmodulin_depe_model1903010001_model.species_labels"
}
],
"package": "li2019-neurogranin-stimulates-ca-calmodulin-depe",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageli2019-neurogranin-stimulates-ca-calmodulin-depe
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicalcium-signalingneurosciencephysiologyvisualisationother