Novak1997 - Cell Cycle Lab

{
  "io": {
    "inputs": [
      {
        "name": "bound_intermediary_enzyme",
        "label": "Bound Intermediary Enzyme",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_intermediary_enzyme",
        "description": "Controls Bound Intermediary Enzyme in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_intermediary_enzyme`."
      },
      {
        "name": "bound_ubiquitin_protease1",
        "label": "Bound Ubiquitin Protease1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_ubiquitin_protease1",
        "description": "Controls Bound Ubiquitin Protease1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_ubiquitin_protease1`."
      },
      {
        "name": "bound_ubiquitin_protease2",
        "label": "Bound Ubiquitin Protease2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_ubiquitin_protease2",
        "description": "Controls Bound Ubiquitin Protease2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_ubiquitin_protease2`."
      },
      {
        "name": "bound_wee1",
        "label": "Bound Wee1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_wee1",
        "description": "Controls Bound Wee1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_wee1`."
      },
      {
        "name": "bound_cdc25",
        "label": "Bound Cdc25",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_cdc25",
        "description": "Controls Bound Cdc25 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.bound_cdc25`."
      },
      {
        "name": "cell_mass",
        "label": "Cell mass",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cell_mass",
        "description": "Controls Cell mass in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cell_mass`."
      }
    ],
    "outputs": [
      {
        "name": "ubiquitin_protease1",
        "label": "Ubiquitin Protease1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.ubiquitin_protease1",
        "description": "Tracks Ubiquitin Protease1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.ubiquitin_protease1`."
      },
      {
        "name": "ubiquitin_protease2",
        "label": "Ubiquitin Protease2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.ubiquitin_protease2",
        "description": "Tracks Ubiquitin Protease2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.ubiquitin_protease2`."
      },
      {
        "name": "wee1_inhibitory_kinase",
        "label": "Wee1 inhibitory kinase",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.wee1_inhibitory_kinase",
        "description": "Tracks Wee1 inhibitory kinase in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.wee1_inhibitory_kinase`."
      },
      {
        "name": "cdc25_activating_phosphatase",
        "label": "Cdc25 activating phosphatase",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc25_activating_phosphatase",
        "description": "Tracks Cdc25 activating phosphatase in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc25_activating_phosphatase`."
      },
      {
        "name": "cdc13_cdc2",
        "label": "Cdc13 Cdc2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_cdc2",
        "description": "Tracks Cdc13 Cdc2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_cdc2`."
      },
      {
        "name": "free_rum1",
        "label": "Free Rum1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.free_rum1",
        "description": "Tracks Free Rum1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.free_rum1`."
      },
      {
        "name": "cig2_cdc2",
        "label": "Cig2 Cdc2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cig2_cdc2",
        "description": "Tracks Cig2 Cdc2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cig2_cdc2`."
      },
      {
        "name": "intermediary_enzyme",
        "label": "Intermediary Enzyme",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.intermediary_enzyme",
        "description": "Tracks Intermediary Enzyme in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.intermediary_enzyme`."
      },
      {
        "name": "cdc13_p_cdc2",
        "label": "Cdc13 P Cdc2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_p_cdc2",
        "description": "Tracks Cdc13 P Cdc2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_p_cdc2`."
      },
      {
        "name": "cig2_cdc2_rum1",
        "label": "Cig2 Cdc2 Rum1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cig2_cdc2_rum1",
        "description": "Tracks Cig2 Cdc2 Rum1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cig2_cdc2_rum1`."
      },
      {
        "name": "cdc13_cdc2_rum1",
        "label": "Cdc13 Cdc2 Rum1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_cdc2_rum1",
        "description": "Tracks Cdc13 Cdc2 Rum1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_cdc2_rum1`."
      },
      {
        "name": "cdc13_p_cdc2_rum1",
        "label": "Cdc13 P Cdc2 Rum1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_p_cdc2_rum1",
        "description": "Tracks Cdc13 P Cdc2 Rum1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.cdc13_p_cdc2_rum1`."
      },
      {
        "name": "s_phase_promoting_factor",
        "label": "S Phase Promoting Factor",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.s_phase_promoting_factor",
        "description": "Tracks S Phase Promoting Factor in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.s_phase_promoting_factor`."
      },
      {
        "name": "maturation_promoting_factor",
        "label": "Maturation-promoting factor",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.maturation_promoting_factor",
        "description": "Tracks Maturation-promoting factor in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.maturation_promoting_factor`."
      },
      {
        "name": "total_rum1",
        "label": "Total Rum1",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_rum1",
        "description": "Tracks Total Rum1 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_rum1`."
      },
      {
        "name": "total_cdc13",
        "label": "Total Cdc13",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_cdc13",
        "description": "Tracks Total Cdc13 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_cdc13`."
      },
      {
        "name": "total_cig2",
        "label": "Total Cig2",
        "maps_to": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_cig2",
        "description": "Tracks Total Cig2 in the lab model via `cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.total_cig2`."
      }
    ]
  },
  "title": "Novak1997 - Cell Cycle Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model"
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model_state"
      ],
      "from": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model_summary"
      ],
      "from": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model_species_labels"
      ],
      "from": "cellcycle_sbml_novak1997_cell_cycle_biomd0000000007_model.species_labels"
    }
  ],
  "package": "novak1997-dna-replication-control",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Single-model lab wrapper for Novak1997 - Cell Cycle. Novak1997 - Cell Cycle Modeling the control of DNA replication in fission yeast. This model is described in the article: Modeling the control of DNA replication in fission yeast.",
  "schema_version": "2.0"
}