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Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_degradation",
"label": "Initial Degradation",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.initial_degradation",
"description": "Initial level of Degradation. Maps to SBML symbol `degradation`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_egf",
"label": "Initial EGF",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.initial_egf",
"description": "Initial level of EGF. Maps to SBML symbol `EGF`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_nerve_growth_factor",
"label": "Initial nerve growth factor",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.initial_nerve_growth_factor",
"description": "Initial level of nerve growth factor. Maps to SBML symbol `NGF`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ras_gap",
"label": "RAS GAP",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.ras_gap",
"description": "RAS GAP. Maps to SBML symbol `RasGAP` and is emitted in native SBML units."
},
{
"name": "erk",
"label": "ERK",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.erk",
"description": "ERK. Maps to SBML symbol `ERK` and is emitted in native SBML units."
},
{
"name": "ras_gdp",
"label": "RAS GDP",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.ras_gdp",
"description": "RAS GDP. Maps to SBML symbol `Ras_GDP` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk"
],
"title": "Sasagawa2005_MAPK Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sasagawa2005_mapk_biomd0000000049_model_state"
],
"from": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sasagawa2005_mapk_biomd0000000049_model_summary"
],
"from": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sasagawa2005_mapk_biomd0000000049_model_species_labels"
],
"from": "signaling_sbml_sasagawa2005_mapk_biomd0000000049_model.species_labels"
}
],
"package": "sasagawa2005-mapk",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesasagawa2005-mapk
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkvisualisationother