Smallbone2013 - Serine biosynthesis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_phosphohydroxypyruvate",
        "units": "native SBML value",
        "default": 0.6,
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.initial_phosphohydroxypyruvate",
        "description": "Initial condition for phosphohydroxypyruvate. Maps to bundled SBML symbol `php`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phosphoserine",
        "units": "native SBML value",
        "default": 0.09,
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.initial_phosphoserine",
        "description": "Initial condition for phosphoserine. Maps to bundled SBML symbol `pser`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "phosphohydroxypyruvate",
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.phosphohydroxypyruvate"
      },
      {
        "name": "phosphoserine",
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.phosphoserine"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.observable_labels"
      }
    ]
  },
  "title": "Smallbone2013 - Serine biosynthesis Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model",
      "parameters": {
        "model_path": "data/BIOMD0000000458.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model_observable_values"
      ],
      "from": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model_run_summary"
      ],
      "from": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model_observable_labels"
      ],
      "from": "metabolism_sbml_smallbone2013_serine_biosynthesis_biomd0000000458_model.observable_labels"
    }
  ],
  "package": "smallbone2013-serine-biosynthesis",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Smallbone2013 - Serine biosynthesis Kinetic modelling of metabolic pathways in application to Serine biosynthesis. This model is described in the article: Kinetic Modeling of Metabolic Pathways: Appli.",
  "schema_version": "2.0"
}